# Summary

## Reproducible research

* [Configuring environment](https://sysbio-vo.gitbook.io/sysbio-course/src/environment)
  * [Package management](https://sysbio-vo.gitbook.io/sysbio-course/environment#package-management)
    * [Installing Ubuntu packages](https://sysbio-vo.gitbook.io/sysbio-course/environment#installing-ubuntu-packages)
    * [Installing R packages](https://sysbio-vo.gitbook.io/sysbio-course/environment#installing-r-packages)
    * [Conda package manager](https://sysbio-vo.gitbook.io/sysbio-course/environment#conda-package-manager)
* [Workflows with SnakeMake](https://sysbio-vo.gitbook.io/sysbio-course/src/workflows)
  * [Basic example](https://sysbio-vo.gitbook.io/sysbio-course/workflows#basic-example)
  * [Advanced example](https://sysbio-vo.gitbook.io/sysbio-course/workflows#advanced-example)

## Practicals

* [Environmental metagenomics](https://sysbio-vo.gitbook.io/sysbio-course/src/pr_metagenomics)
* [Managing VMs with OpenStack](https://sysbio-vo.gitbook.io/sysbio-course/src/pr_openstack)
* [Links](https://sysbio-vo.gitbook.io/sysbio-course/src/links)
